Publications

Gabriela M. Quinlan, Jeffrey W. Doser, Melanie A. Kammerer, Christina M. Grozinger (2024). Estimating genus-specific effects of non-native honey bees and urbanization on wild bee communities: A case study in Maryland, United States. Science of the Total Environment.

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Jeffrey W. Doser, Andrew O. Finley, Marc Kéry, Elise F. Zipkin (2024). spAbundance: An R package for single-species and multi-species spatially-explicit abundance models. Methods in Ecology and Evolution https://doi.org/10.1111/2041-210X.14332.

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Jeffrey W. Doser, Marc Kéry, Sarah P. Saunders, Andrew O. Finley, Brooke L. Bateman, Joanna Grand, Shannon Reault, Aaron S. Weed, Elise F. Zipkin (2024). Guidelines for the use of spatially-varying coefficients in species distribution models. Global Ecology and Biogeography: https://doi.org/10.1111/geb.13814.

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Alex W. Bajcz, Wesley J. Glisson, Jeffrey W. Doser, Daniel J. Larkin, John R. Fieberg (2024). A within-lake occupancy model for starry stonewort, Nitellopsis obtusa, to support early detection and monitoring. Scientific Reports https://doi.org/10.1038/s41598-024-52608-0.

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Jeffrey W. Doser, Sara Stoudt (2024). 'Fractional replication' in single-visit multi-season occupancy models: Impacts of spatiotemporal autocorrelation on identifiability. Methods in Ecology and Evolution https://doi.org/10.1111/2041-210X.14275.

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Vladimir Kovalenko, Jeffrey W. Doser, Lisa J. Bate, Diana L. Six (2024). Paired acoustic recordings and point count surveys reveal Clark's nutcracker and whitebark pine associations across Glacier National Park. Ecology and Evolution https://doi.org/10.1002/ece3.10867.

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Jeffrey W. Doser, Andrew O. Finley, Sarah P. Saunders, Marc Kéry, Aaron S. Weed, Elise F. Zipkin (2024). Modeling complex species-environment relationships through spatially-varying coefficient occupancy models. Journal of Agricultural, Biological, and Environmental Statistics (2024) https://doi.org/10.1007/s13253-023-00595-6.

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Elise F. Zipkin, Jeffrey W. Doser (2024). Context matters in ecological forecasting: Lessons in predicting species distributions. Global Change Biology https://doi.org/10.1111/gcb.17123.

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Caleb P. Roberts, Jeffrey W. Doser, Lauren L. Berry, Allison Fowler, Percival M. Marshall, Christopher Middaugh, Karen Rowe, Jessican M. Schmit, Michael Shaw, Kenneth Wilson (2024). Scenario planning and multispecies occupancy models reveal positive avian responses to restoration of afforested woodlands. Restoration Ecology https://onlinelibrary.wiley.com/doi/abs/10.1111/rec.13998.

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Elise F. Zipkin, Jeffrey W. Doser, Courtney L. Davis, Wendy Leuenberger, Samuel Ayebare, Kayla L. Davis (2023). Integrated community models: A framework combining multispecies data sources to estimate the status, trends and dynamics of biodiversity. Journal of Animal Ecology https://doi.org/10.1111/1365-2656.14012.

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Samuel Ayebare, Jeffrey W. Doser, Andrew J. Plumptre, Isaiah Owiunji, Hamlet Mugabe, Elise F. Zipkin (2023). An environmental habitat gradient and within-habitat segregation enable co-existence of ecologically similar bird species. Proceedings of the Royal Society B https://royalsocietypublishing.org/doi/full/10.1098/rspb.2023.0467.

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Jeffrey W. Doser, Andrew O. Finley, Sudipto Banerjee (2023). Joint species distribution models with imperfect detection for high-dimensional spatial data. Ecology https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecy.4137.

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Jeffrey W. Doser, Andrew O. Finley, Marc Kéry, Elise F. Zipkin (2022). spOccupancy: An R package for fitting single-species, multi-species, and integrated spatial occupancy models. Methods in Ecology and Evolution https://doi.org/10.1111/2041-210X.13897.

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Jeffrey W. Doser, Wendy Leuenberger, T. Scott Sillett, Michael T. Hallworth, Elise F. Zipkin (2022). Integrated community occupancy models: A framework to assess occurrence and biodiversity dynamics using multiple data sources. Methods in Ecology and Evolution https://doi.org/10.1111/2041-210X.13811.

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Jeffrey W. Doser, Andrew O. Finley, Aaron S. Weed, Elise F. Zipkin (2021). Integrating automated acoustic vocalization data and point count surveys for estimation of bird abundance. In: Methods in Ecology and Evolution https://doi.org/10.1111/2041-210X.13578.

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Jeffrey W. Doser, Aaron S. Weed, Elise F. Zipkin, Kathryn M. Miller, Andrew O. Finley (2021). Trends in bird abundance differ among protected forests but not bird guilds. Ecological Applications: https://doi.org/10.1002/eap.2377.

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Jeffrey W. Doser, Andrew O. Finley, Eric P. Kasten, Stuart H. Gage (2020). Assessing soundscape disturbance through hierarchical models and acoustic indices: A case study on a shelterwood logged northern Michigan forest. Ecological Indicators https://doi.org/10.1016/j.ecolind.2020.106244.

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Jeffrey W. Doser, Kristina M. Hannam, Andrew O. Finley (2020). Characterizing functional relationships between anthropogenic and biological sounds: A western New York state soundscape case study. Landscape Ecology https://doi.org/10.1007/s10980-020-00973-2.

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