Publications

In review

39.Survey design considerations for spatial occupancy models

Jeffrey W. Doser, Robert Howell, Alexa R. Busby Methods in Ecology and Evolution, In review

38.Protecting birds in protected areas: a multi-scale analysis of forest structure and species occurrence

Bruna R. Amaral, Jeffrey W. Doser, Aaron S. Weed, Kathryn M. Miller, Elise F. Zipkin Landscape Ecology, In review

37.The uncertainties of planted pine: Modeling the effect of daily weather variability on individual tree growth in the Southern U.S. using artificial neural networks

Richard H. Manner, Matthias Sprenger, Jeffrey W. Doser, Justin S. Baker Canadian Journal of Forest Research, In review

36.Conservation hotspots and Marine Protected Areas: Revealing opportunities to protect threatened chondrichthyans in the North-East Atlantic

Amaëlle Bisch, Sophie Elliot, Jeffrey W. Doser, Pauline Stephan, Anthony Acou Journal of Applied Ecology, In review

35.Small area estimation of basal area in a highly inaccessible forest region

Jeffrey W. Doser, Safiullah Khurram, Mujeeburahman Ariez, Mohammad Nasir Shalizi, John W. Groninger Canadian Journal of Forest Research, In review

34.Pyrodiversity drives species-habitat relationships in an ecoregion of unique remnant European wilderness

Máire Kirkland, Jeffrey W. Doser, Philip W. Atkinson, Stuart E. Newson, Simon Gillings, Tatiana Kornienko, Viktar Fenchuk, James W. Pearce-Higgins, Adham Ashton-Butt Global Change Biology, In review

33.Joint species distribution modeling for restoration of American Chestnut (Castanea dentata) in the United States under current and future climate conditions

Matthew Fertakos, Bethany A. Bradley, Jeffrey W. Doser, Malcolm S. Itter Journal of Applied Ecology, In review

32.Growth, yield, and economic analyses for managing shortleaf pine

Sayeed Mehmood, Jeffrey W. Doser, Joseph Roise, Frederick Cubbage Book chapter for The Ecology and Management of Shortleaf Pine Ecosystems, In review after minor revision

31.Estimating the occurrence and detection of human-elephant conflict in India through a Bayesian occupancy modeling framework

Anubhav Vanamamalai, Kristi K. Karanth, Jeffrey W. Doser, Ruth DeFries Biological Conservation, In review after major revision

2026

30.Estimating spatially varying occupancy trends for multi-scale conservation: An amphibian case study in the midwestern United States

Jeffrey W. Doser, Margaret Edwards, Krista A. Larson, Elise F. Zipkin, Christopher S. Jennelle Journal of Applied Ecology, 2026

29.Should you use data integration for your distribution model?

Benjamin R. Goldstein, Jeffrey W. Doser, Brent S. Pease, Krishna Pacifici Journal of Animal Ecology, 2026

2025

28.Acoustic Monitoring Enables Multi-Taxa Conservation Assessment and Prioritisation Over Large Scales and for Rare and Cryptic Species

Adham Ashton-Butt, Stuart E. Newson, Jeffrey W. Doser, Simon Gillings, Tatiana Kornienko, Viktar Frenchuk, James W. Pearce-Higgins, Chris Scott, Philip W. Atkinson Global Ecology and Biogeography, 2025

27.Multivariate spatial models for small area estimation of species-specific forest inventory parameters

Jeffrey W. Doser, Malcolm S. Itter, Grant M. Domke, Andrew O. Finley Forest Ecology and Management, 2025

26.Three decades of declines restructure butterfly communities in the Midwestern United States

Wendy Leuenberger, Jeffrey W. Doser, Michael W. Belitz, Leslie Ries, Nick M. Haddad, Wayne E. Thogmartin, Elise F. Zipkin PNAS, 2025

25.Discussion on Continuous-space occupancy models by Wilson J. Wright and Mevin B. Hooten

Jeffrey W. Doser, Krishna Pacifici Biometrics, 2025

24.The structure of the end-Cretaceous dinosaur fossil record in North America

Christopher D. Dean, Alfio Alessandro Chiarenza, Jeffrey W. Doser, Alexander Farnsworth, Lewis A. Jones, Sineád J. Lyster, Charlotte L. Outhwaite, Paul J. Valdes, Richard J. Butler, Philip D. Mannion Current Biology, 2025

23.Environmental variability shapes life history of the world's birds

Casey Youngflesh, Kelly Kapsar, Adriana Uscanga, Peter J. Williams, Jeffrey W. Doser, Lala Kounta, Phoebe L. Zarnetske Ecology Letters, 2025

22.Functional R code is rare in species distribution and abundance papers

Kenneth F. Kellner, Jeffrey W. Doser, Jerrold L. Belant Ecology, 2025

21.Modeling complex species-environment relationships through spatially-varying coefficient occupancy models

Jeffrey W. Doser, Andrew O. Finley, Sarah P. Saunders, Marc Kéry, Aaron S. Weed, Elise F. Zipkin Journal of Agricultural, Biological, and Environmental Statistics, 2025

2024

20.Estimating genus-specific effects of non-native honey bees and urbanization on wild bee communities: A case study in Maryland, United States

Gabriela M. Quinlan, Jeffrey W. Doser, Melanie A. Kammerer, Christina M. Grozinger Science of the Total Environment, 2024

19.spAbundance: An R package for single-species and multi-species spatially-explicit abundance models

Jeffrey W. Doser, Andrew O. Finley, Marc Kéry, Elise F. Zipkin Methods in Ecology and Evolution, 2024

18.A century of statistical Ecology

Neil A. Gilbert, Bruna R. Amaral, Olivia M. Smith, Peter J. Williams, Sydney Ceyzyk, Samuel Ayebare, Kayla L. Davis, Wendy Leuenberger, Jeffrey W. Doser, Elise F. Zipkin Ecology, 2024

17.Guidelines for the use of spatially-varying coefficients in species distribution models

Jeffrey W. Doser, Marc Kéry, Sarah P. Saunders, Andrew O. Finley, Brooke L. Bateman, Joanna Grand, Shannon Reault, Aaron S. Weed, Elise F. Zipkin Global Ecology and Biogeography, 2024

16.A within-lake occupancy model for starry stonewort, Nitellopsis obtusa, to support early detection and monitoring

Alex W. Bajcz, Wesley J. Glisson, Jeffrey W. Doser, Daniel J. Larkin, John R. Fieberg Scientific Reports, 2024

15.Paired acoustic recordings and point count surveys reveal Clark's nutcracker and whitebark pine associations across Glacier National Park

Vladimir Kovalenko, Jeffrey W. Doser, Lisa J. Bate, Diana L. Six Ecology and Evolution, 2024

14.Context matters in ecological forecasting: Lessons in predicting species distributions

Elise F. Zipkin, Jeffrey W. Doser Global Change Biology, 2024

13.‘Fractional replication’ in single-visit multi-season occupancy models: Impacts of spatiotemporal autocorrelation on identifiability

Jeffrey W. Doser, Sara Stoudt Methods in Ecology and Evolution, 2024

12.Scenario planning and multispecies occupancy models reveal positive avian responses to restoration of afforested woodlands

Caleb P. Roberts, Jeffrey W. Doser, Lauren L. Berry, Allison Fowler, Percival M. Marshall, Christopher Middaugh, Karen Rowe, Jessican M. Schmit, Michael Shaw, Kenneth Wilson Restoration Ecology, 2024

2023

11.Integrated community models: A framework combining multispecies data sources to estimate the status, trends and dynamics of biodiversity

Elise F. Zipkin, Jeffrey W. Doser, Courtney L. Davis, Wendy Leuenberger, Samuel Ayebare, Kayla L. Davis Journal of Animal Ecology, 2023

10.An environmental habitat gradient and within-habitat segregation enable co-existence of ecologically similar bird species

Samuel Ayebare, Jeffrey W. Doser, Andrew J. Plumptre, Isaiah Owiunji, Hamlet Mugabe, Elise F. Zipkin Proceedings of the Royal Society B, 2023

9.Joint species distribution models with imperfect detection for high-dimensional spatial data

Jeffrey W. Doser, Andrew O. Finley, Sudipto Banerjee Ecology, 2023

2022

8.spOccupancy: An R package for fitting single-species, multi-species, and integrated spatial occupancy models

Jeffrey W. Doser, Andrew O. Finley, Marc Kéry, Elise F. Zipkin Methods in Ecology and Evolution, 2022

7.Integrated community occupancy models: A framework to assess occurrence and biodiversity dynamics using multiple data sources

Jeffrey W. Doser, Wendy Leuenberger, T. Scott Sillett, Michael T. Hallworth, Elise F. Zipkin Methods in Ecology and Evolution, 2022

2021

6.Trends in bird abundance differ among protected forests but not bird guilds

Jeffrey W. Doser, Aaron S. Weed, Elise F. Zipkin, Kathryn M. Miller, Andrew O. Finley Ecological Applications, 2021

5.Integrating automated acoustic vocalization data and point count surveys for estimation of bird abundance

Jeffrey W. Doser, Andrew O. Finley, Aaron S. Weed, Elise F. Zipkin Methods in Ecology and Evolution, 2021

4.The transcription factors SIX3 and VAX1 are required for suprachiasmatic nucleus circadian output and fertility in female mice

Hanne M. Hoffmann, Jason D. Meadows, Joseph A. Breuer, Alexandra M. Yaw, Duong Nguyen, Karen J. Tonsfeldt, Austin Y. Chin, Brooke M. Devries, Crystal Trang, Haley J. Oosterhouse, Jessica Sora Lee, Jeffrey W. Doser, Michael R. Gorman, David K. Welsh, Pamela L. Mellon Journal of Neuroscience Research, 2021

2020

3.ForestFit: An R package for modeling plant size distributions

Mahdi Teimouri, Jeffrey W. Doser, Andrew O. Finley Environmental Modelling & Software, 2020

2.Assessing soundscape disturbance through hierarchical models and acoustic indices: A case study on a shelterwood logged northern Michigan forest

Jeffrey W. Doser, Andrew O. Finley, Eric P. Kasten, Stuart H. Gage Ecological Indicators, 2020

1.Characterizing functional relationships between anthropogenic and biological sounds: A western New York state soundscape case study

Jeffrey W. Doser, Kristina M. Hannam, Andrew O. Finley Landscape Ecology, 2020